YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNEEELKT VVETFETTPY EYEWAPPCEK VSIRELGSWL LPPLYSLVFI VGLLGNMMVV  60
   61 LILIKYRKLQ IMTNIYLLNL AISDLLFLFT VPFWIHYVLW NEWGFGHCMC KMLSGLYYLA 120
  121 LYSEIFFIIL LTIDRYLAIV HAVLALRART VTFATITSII TWGFAVLAAL PEFIFHESQD 180
  181 NFGDLSCSPR YPEGEEDSWK RFHALRMNIF GLALPLLIMV ICYSGIIKTL LRCPNKKKHK 240
  241 AIQLIFVVMI VFFIFWTPYN LVLLLSAFHS TFLETSCQQS IHLDLAMQVT EVITHTHCCI 300
  301 NPIIYAFVGE RFRKHLRLFF HRNVAIYLRK YISFLPGEKL ERTSSVSPST GEQEISVVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.98
Transmembrane Helix	44	64	0.94
Cytoplasmic	65	74	0.87
Transmembrane Helix	75	97	0.93
Non-Cytoplasmic	98	115	0.90
Transmembrane Helix	116	138	0.84
Cytoplasmic	139	150	0.81
Transmembrane Helix	151	171	0.91
Non-Cytoplasmic	172	208	0.91
Transmembrane Helix	209	231	0.87
Cytoplasmic	232	241	0.92
Transmembrane Helix	242	263	0.89
Non-Cytoplasmic	264	292	0.88
Transmembrane Helix	293	309	0.57
Cytoplasmic	310	359	0.57