YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN2A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.97
Transmembrane Helix	125	148	0.87
Non-Cytoplasmic	149	192	0.92
Transmembrane Helix	193	213	0.83
Cytoplasmic	214	223	0.72
Transmembrane Helix	224	243	0.80
Non-Cytoplasmic	244	250	0.72
Transmembrane Helix	251	272	0.93
Cytoplasmic	273	402	0.86
Transmembrane Helix	403	427	0.91
Non-Cytoplasmic	428	759	0.87
Transmembrane Helix	760	778	0.86
Cytoplasmic	779	789	0.76
Transmembrane Helix	790	812	0.86
Non-Cytoplasmic	813	828	0.86
Transmembrane Helix	829	852	0.85
Cytoplasmic	853	872	0.89
Transmembrane Helix	873	897	0.89
Non-Cytoplasmic	898	925	0.91
Transmembrane Helix	926	944	0.85
Cytoplasmic	945	958	0.76
Transmembrane Helix	959	981	0.92
Non-Cytoplasmic	982	1211	0.95
Transmembrane Helix	1212	1232	0.86
Cytoplasmic	1233	1247	0.90
Transmembrane Helix	1248	1267	0.88
Non-Cytoplasmic	1268	1278	0.75
Transmembrane Helix	1279	1302	0.79
Cytoplasmic	1303	1324	0.84
Transmembrane Helix	1325	1351	0.87
Non-Cytoplasmic	1352	1448	0.74
Transmembrane Helix	1449	1473	0.88
Cytoplasmic	1474	1530	0.72
Transmembrane Helix	1531	1550	0.85
Non-Cytoplasmic	1551	1561	0.64
Transmembrane Helix	1562	1583	0.92
Cytoplasmic	1584	1591	0.57
Transmembrane Helix	1592	1615	0.85
Non-Cytoplasmic	1616	1656	0.59
Transmembrane Helix	1657	1684	0.76
Cytoplasmic	1685	1698	0.68
Transmembrane Helix	1699	1716	0.59
Non-Cytoplasmic	1717	1750	0.59
Transmembrane Helix	1751	1775	0.86
Cytoplasmic	1776	2005	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVLVPPG PDSFRFFTRE SLAAIEQRIA EEKAKRPKQE RKDEDDENGP KPNSDLEAGK  60
   61 SLPFIYGDIP PEMVSEPLED LDPYYINKKT FIVLNKGKAI SRFSATSALY ILTPFNPIRK 120
  121 LAIKILVHSL FNVLIMCTIL TNCVFMTMSN PPDWTKNVEY TFTGIYTFES LIKILARGFC 180
  181 LEDFTFLRNP WNWLDFTVIT FAYVTEFVNL GNVSALRTFR VLRALKTISV IPGLKTIVGA 240
  241 LIQSVKKLSD VMILTVFCLS VFALIGLQLF MGNLRNKCLQ WPPDNSTFEI NITSFFNNSL 300
  301 DWNGTAFNRT VNMFNWDEYI EDKSHFYFLE GQNDALLCGN SSDAGQCPEG YICVKAGRNP 360
  361 NYGYTSFDTF SWAFLSLFRL MTQDFWENLY QLTLRAAGKT YMIFFVLVIF LGSFYLINLI 420
  421 LAVVAMAYEE QNQATLEEAE QKEAEFQQML EQLKKQQEEA QAAAAAASAE SRDFSGAGGI 480
  481 GVFSESSSVA SKLSSKSEKE LKNRRKKKKQ KEQAGEEEKE DAVRKSASED SIRKKGFQFS 540
  541 LEGSRLTYEK RFSSPHQSLL SIRGSLFSPR RNSRASLFNF KGRVKDIGSE NDFADDEHST 600
  601 FEDNDSRRDS LFVPHRHGER RPSNVSQASR ASRGIPTLPM NGKMHSAVDC NGVVSLVGGP 660
  661 SALTSPVGQL LPEGTTTETE IRKRRSSSYH VSMDLLEDPS RQRAMSMASI LTNTMEELEE 720
  721 SRQKCPPCWY KFANMCLIWD CCKPWLKVKH VVNLVVMDPF VDLAITICIV LNTLFMAMEH 780
  781 YPMTEQFSSV LSVGNLVFTG IFTAEMFLKI IAMDPYYYFQ EGWNIFDGFI VSLSLMELGL 840
  841 ANVEGLSVLR SFRLLRVFKL AKSWPTLNML IKIIGNSVGA LGNLTLVLAI IVFIFAVVGM 900
  901 QLFGKSYKEC VCKISNDCEL PRWHMHHFFH SFLIVFRVLC GEWIETMWDC MEVAGQTMCL 960
  961 TVFMMVMVIG NLVVLNLFLA LLLSSFSSDN LAATDDDNEM NNLQIAVGRM QKGIDFVKRK1020
 1021 IREFIQKAFV RKQKALDEIK PLEDLNNKKD SCISNHTTIE IGKDLNYLKD GNGTTSGIGS1080
 1081 SVEKYVVDES DYMSFINNPS LTVTVPIALG ESDFENLNTE EFSSESDMEE SKEKLNATSS1140
 1141 SEGSTVDIGA PAEGEQPEAE PEESLEPEAC FTEDCVRKFK CCQISIEEGK GKLWWNLRKT1200
 1201 CYKIVEHNWF ETFIVFMILL SSGALAFEDI YIEQRKTIKT MLEYADKVFT YIFILEMLLK1260
 1261 WVAYGFQMYF TNAWCWLDFL IVDVSLVSLT ANALGYSELG AIKSLRTLRA LRPLRALSRF1320
 1321 EGMRVVVNAL LGAIPSIMNV LLVCLIFWLI FSIMGVNLFA GKFYHCINYT TGEMFDVSVV1380
 1381 NNYSECQALI ESNQTARWKN VKVNFDNVGL GYLSLLQVAT FKGWMDIMYA AVDSRNVELQ1440
 1441 PKYEDNLYMY LYFVIFIIFG SFFTLNLFIG VIIDNFNQQK KKFGGQDIFM TEEQKKYYNA1500
 1501 MKKLGSKKPQ KPIPRPANKF QGMVFDFVTK QVFDISIMIL ICLNMVTMMV ETDDQSQEMT1560
 1561 NILYWINLVF IVLFTGECVL KLISLRHYYF TIGWNIFDFV VVILSIVGMF LAELIEKYFV1620
 1621 SPTLFRVIRL ARIGRILRLI KGAKGIRTLL FALMMSLPAL FNIGLLLFLV MFIYAIFGMS1680
 1681 NFAYVKREVG IDDMFNFETF GNSMICLFQI TTSAGWDGLL APILNSGPPD CDPEKDHPGS1740
 1741 SVKGDCGNPS VGIFFFVSYI IISFLVVVNM YIAVILENFS VATEESAEPL SEDDFEMFYE1800
 1801 VWEKFDPDAT QFIEFCKLSD FAAALDPPLL IAKPNKVQLI AMDLPMVSGD RIHCLDILFA1860
 1861 FTKRVLGESG EMDALRIQME ERFMASNPSK VSYEPITTTL KRKQEEVSAI VIQRAYRRYL1920
 1921 LKQKVKKVSS IYKKDKGKED EGTPIKEDII TDKLNENSTP EKTDVTPSTT SPPSYDSVTK1980
 1981 PEKEKFEKDK SEKEDKGKDI RESKK