YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN1A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.93
Transmembrane Helix	124	147	0.88
Non-Cytoplasmic	148	191	0.81
Transmembrane Helix	192	212	0.70
Cytoplasmic	213	222	0.71
Transmembrane Helix	223	242	0.76
Non-Cytoplasmic	243	249	0.71
Transmembrane Helix	250	271	0.92
Cytoplasmic	272	400	0.82
Transmembrane Helix	401	425	0.91
Non-Cytoplasmic	426	767	0.81
Transmembrane Helix	768	787	0.86
Cytoplasmic	788	797	0.76
Transmembrane Helix	798	821	0.84
Non-Cytoplasmic	822	837	0.84
Transmembrane Helix	838	858	0.90
Cytoplasmic	859	881	0.80
Transmembrane Helix	882	906	0.89
Non-Cytoplasmic	907	937	0.86
Transmembrane Helix	938	956	0.66
Cytoplasmic	957	965	0.58
Transmembrane Helix	966	990	0.81
Non-Cytoplasmic	991	1218	0.74
Transmembrane Helix	1219	1241	0.80
Cytoplasmic	1242	1257	0.72
Transmembrane Helix	1258	1274	0.78
Non-Cytoplasmic	1275	1288	0.71
Transmembrane Helix	1289	1312	0.78
Cytoplasmic	1313	1334	0.85
Transmembrane Helix	1335	1361	0.88
Non-Cytoplasmic	1362	1458	0.74
Transmembrane Helix	1459	1483	0.87
Cytoplasmic	1484	1540	0.61
Transmembrane Helix	1541	1560	0.83
Non-Cytoplasmic	1561	1571	0.49
Transmembrane Helix	1572	1595	0.79
Cytoplasmic	1596	1601	0.46
Transmembrane Helix	1602	1625	0.84
Non-Cytoplasmic	1626	1659	0.45
Transmembrane Helix	1660	1694	0.70
Cytoplasmic	1695	1708	0.56
Transmembrane Helix	1709	1726	0.56
Non-Cytoplasmic	1727	1760	0.52
Transmembrane Helix	1761	1785	0.86
Cytoplasmic	1786	2009	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTVLVPPG PDSFNFFTRE SLAAIERRIA EEKAKNPKPD KKDDDENGPK PNSDLEAGKN  60
   61 LPFIYGDIPP EMVSEPLEDL DPYYINKKTF IVLNKGKAIF RFSATSALYI LTPFNPLRKI 120
  121 AIKILVHSLF SMLIMCTILT NCVFMTMSNP PDWTKNVEYT FTGIYTFESL IKIIARGFCL 180
  181 EDFTFLRDPW NWLDFTVITF AYVTEFVDLG NVSALRTFRV LRALKTISVI PGLKTIVGAL 240
  241 IQSVKKLSDV MILTVFCLSV FALIGLQLFM GNLRNKCVQW PPTNASLEEH SIEKNVTTDY 300
  301 NGTLVNETVF EFDWKSYIQD SRYHYFLEGV LDALLCGNSS DAGQCPEGYM CVKAGRNPNY 360
  361 GYTSFDTFSW AFLSLFRLMT QDFWENLYQL TLRAAGKTYM IFFVLVIFLG SFYLINLILA 420
  421 VVAMAYEEQN QATLEEAEQK EAEFQQMLEQ LKKQQEAAQQ AAAATASEHS REPSAAGRLS 480
  481 DSSSEASKLS SKSAKERRNR RKKRKQKEQS GGEEKDDDEF HKSESEDSIR RKGFRFSIEG 540
  541 NRLTYEKRYS SPHQSLLSIR GSLFSPRRNS RTSLFSFRGR AKDVGSENDF ADDEHSTFED 600
  601 NESRRDSLFV PRRHGERRNS NLSQTSRSSR MLAGLPANGK MHSTVDCNGV VSLVGGPSVP 660
  661 TSPVGQLLPE VIIDKPATDD NGTTTETEMR KRRSSSFHVS MDFLEDPSQR QRAMSIASIL 720
  721 TNTVEELEES RQKCPPCWYK FSNIFLIWDC SPYWLKVKHI VNLVVMDPFV DLAITICIVL 780
  781 NTLFMAMEHY PMTEHFNHVL TVGNLVFTGI FTAEMFLKII AMDPYYYFQE GWNIFDGFIV 840
  841 TLSLVELGLA NVEGLSVLRS FRLLRVFKLA KSWPTLNMLI KIIGNSVGAL GNLTLVLAII 900
  901 VFIFAVVGMQ LFGKSYKDCV CKIATDCKLP RWHMNDFFHS FLIVFRVLCG EWIETMWDCM 960
  961 EVAGQAMCLT VFMMVMVIRN LVVLNLFLAL LLSSFSADNL AATDDDNEMN NLQIAVDRMH1020
 1021 KGVAYVKRKI YEFIQQSFVR KQKILDEIKP LDDLNNRKDN CTSNHTTEIG KDLDCLKDVN1080
 1081 GTTSGIGTGS SVEKYIIDES DYMSFINNPS LTVTVPIAVG ESDFENLNTE DFSSESDLEE1140
 1141 SKEKLNESSS SSEGSTVDIG APAEEQPVME PEETLEPEAC FTEGCVQRFK CCQISVEEGR1200
 1201 GKQWWNLRRT CFRIVEHNWF ETFIVFMILL SSGALAFEDI YIDQRKTIKT MLEYADKVFT1260
 1261 YIFILEMLLK WVAYGYQTYF TNAWCWLDFL IVDVSLVSLT ANALGYSELG AIKSLRTLRA1320
 1321 LRPLRALSRF EGMRVVVNAL LGAIPSIMNV LLVCLIFWLI FSIMGVNLFA GKFYHCVNTT1380
 1381 TGDTFEITEV NNHSDCLKLI ERNETARWKN VKVNFDNVGF GYLSLLQVAT FKGWMDIMYA1440
 1441 AVDSRNVELQ PKYEESLYMY LYFVIFIIFG SFFTLNLFIG VIIDNFNQQK KKFGGQDIFM1500
 1501 TEEQKKYYNA MKKLGSKKPQ KPIPRPGNKF QGMVFDFVTR QVFDISIMIL ICLNMVTMMV1560
 1561 ETDDQSDYVT SILSRINLVF IVLFTGECVL KLISLRHYYF TIGWNIFDFV VVILSIVGMF1620
 1621 LAELIEKYFV SPTLFRVIRL ARIGRILRLI KGAKGIRTLL FALMMSLPAL FNIGLLLFLV1680
 1681 MFIYAIFGMS NFAYVKREVG IDDMFNFETF GNSMICLFQI TTSAGWDGLL APILNSKPPD1740
 1741 CDPNKVNPGS SVKGDCGNPS VGIFFFVSYI IISFLVVVNM YIAVILENFS VATEESAEPL1800
 1801 SEDDFEMFYE VWEKFDPDAT QFMEFEKLSQ FAAALEPPLN LPQPNKLQLI AMDLPMVSGD1860
 1861 RIHCLDILFA FTKRVLGESG EMDALRIQME ERFMASNPSK VSYQPITTTL KRKQEEVSAV1920
 1921 IIQRAYRRHL LKRTVKQASF TYNKNKLKGG ANLLVKEDMI IDRINENSIT EKTDLTMSTA1980
 1981 ACPPSYDRVT KPIVEKHEQE GKDEKAKGK