YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	26	0.87
Non-Cytoplasmic	27	60	0.92
Transmembrane Helix	61	85	0.89
Cytoplasmic	86	93	0.88
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	120	0.86
Transmembrane Helix	121	143	0.93
Cytoplasmic	144	153	0.84
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	183	0.75
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	269	0.93
Transmembrane Helix	270	290	0.76
Non-Cytoplasmic	291	304	0.79
Transmembrane Helix	305	326	0.94
Cytoplasmic	327	333	0.85
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	360	0.85
Transmembrane Helix	361	388	0.78
Cytoplasmic	389	399	0.76
Transmembrane Helix	400	420	0.83
Non-Cytoplasmic	421	425	0.72
Transmembrane Helix	426	448	0.90
Cytoplasmic	449	493	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTAKVTPSL VFAVTVATIG SFQFGYNTGV INAPETIIKD FLNYTLEERL EDLPREGLLT  60
   61 TLWSLCVAIF SVGGMIGSFS VGLFVNRFGR RNSMLLVNLI AILGGCLMGF AKIAESVEML 120
  121 ILGRLIIGIF CGLCTGFVPM YIGEVSPTAL RGAFGTLNQL GIVVGILVAQ VFGLDFILGS 180
  181 EELWPGLLGL TIIPAILQSA ALPFCPESPR FLLINRKEED QATEILQRLW GTPDVIQEIQ 240
  241 EMKDESIRMS QEKQVTVLEL FKSPSYFQPL LISVVLQLSQ QFSGINAVFY YSTGIFQDAG 300
  301 VQEPIYATIG AGVVNTIFTV VSLFLVERAG RRTLHMIGLG GMAVCSVFMT ISLLLKDEYE 360
  361 AMSFVCIVAI LVYVAFFEIG PGPIPWFIVA ELFSQGPRPA AMAVAGCSNW TSNFLVGMFF 420
  421 PSAAAYLGAY VFIIFAAFLV FFLIFTSFKV PETKGRTFED ITRAFEGQAH SGKGSAGVEL 480
  481 NSMQPVKETP GNA