YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BSND_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEKTFRIG FIVLGLFLLS LGTFLMSHDR PQVYGTFYAM GSIMVIGGVL WSMCQCYPKI  60
   61 TFVPADSDFQ GMLSPKALSL LETGLSEVKS PQPPYVRLWE EAAYDQSLPD FTHIQMKVMG 120
  121 YSEDPRPLLA PELKTGTSSA KEGEPHSAQT WMEAAVVVHR ELDEKEGEKS RSQSSPPACS 180
  181 QGSAPLASFH DDLDVGSSEG RSPQPSPPDR DEAHLQVPWA SRGPLDRFGD FALIDDTPIS 240
  241 EDMGLEGQAQ EEALPSKQPW SLRMKEETVQ AGAEEPEQEE EDLYYGLPDS PGDPLPDKEL 300
  301 GFEPDVQG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	33	0.80
Transmembrane Helix	34	54	0.90
Cytoplasmic	55	308	0.89