YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXA6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDWSALHQL LEKVQPYSTA GGKVWIKVLF IFRILLLGTA IESAWSDEQF EFHCNTQQPG  60
   61 CENVCYDQAF PISHVRLWVL QVIFVSVPTL LHLAHVYYVI RQNEKLKKQE EEELKVAHFN 120
  121 GASGERRLQK HTGKHIKCGS KEHGNRKMRG RLLLTYMASI FFKSVFEVAF LLIQWYLYGF 180
  181 TLSAVYICEQ SPCPHRVDCF LSRPTEKTIF ILFMLVVSMV SFVLNVIELF YVLFKAIKNH 240
  241 LGNEKEEVYC NPVELQKPSC VSSSAVLTTI CSSDQVVPVG LSSFYM

Type	Start	End	Confidence
Cytoplasmic	1	23	0.89
Transmembrane Helix	24	43	0.83
Non-Cytoplasmic	44	76	0.94
Transmembrane Helix	77	99	0.91
Cytoplasmic	100	151	0.99
Transmembrane Helix	152	176	0.87
Non-Cytoplasmic	177	209	0.95
Transmembrane Helix	210	232	0.94
Cytoplasmic	233	286	0.96