YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWSVFEGLL SGVNKYSTAF GRIWLSLVFV FRVLVYLVTA ERVWGDDQKD FDCNTRQPGC  60
   61 TNVCYDEFFP VSHVRLWALQ LILVTCPSLL VVMHVAYRKA REKKYQQEVG KGYLYPNPGK 120
  121 KRGGLWWTYV CSLLFKATID IIFLYLFHAF YPRYTLPSMV KCHSAPCPNT VDCFIAKPSE 180
  181 KNIFIVFMLV TAIVCILLNL VELLYLVIKR CSECAPAKRP PTAHAKNDPN WANPSSKEKD 240
  241 FLSSDLIFLG SDTHPPLLPD RPRAHVKKTI L

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.89
Non-Cytoplasmic	41	75	0.97
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	124	0.98
Transmembrane Helix	125	149	0.89
Non-Cytoplasmic	150	183	0.97
Transmembrane Helix	184	208	0.87
Cytoplasmic	209	271	0.99