YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19525674
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCAFSGNGRQ CAANGTECRS GWVGPNGGIT NFDNFAFAML TVFQCITMEG WTDVLYWVND  60
   61 AIGWEWPWVY FVSLIILGSF FVLNLVLGVL SGEFSKEREK AKARGDFQKL REKQQLEEDL 120
  121 KGYLDWITQA EDIDPENEEE GGEEGKRNRV TVADLLREDK KKRKFCCFRQ RRAEDHASMP 180
  181 TSETESVNTE NVSGEGETQG CCGSLCQAIS KSKLSRRWRR WNRFNRRRCR AAVKSVTFYW 240
  241 LVIVLVFLNT LTISSEHYNQ PDW

Type	Start	End	Confidence
Cytoplasmic	1	28	0.90
Transmembrane Helix	29	51	0.77
Non-Cytoplasmic	52	67	0.89
Transmembrane Helix	68	90	0.92
Cytoplasmic	91	235	0.97
Transmembrane Helix	236	253	0.96
Non-Cytoplasmic	254	263	0.86