YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19525675
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADAESLNTAQ KEEAEEKERK KIARKESLEN KKNNKPEVNQ IANSDNKVTI DDYQEEAEDK  60
   61 DPYPPCDVPG EEEEEEEEDE PEVPAGPRPR RISELNMKEK IAPIPEGSAF FILSKTNPIR 120
  121 VGCHKLINHH IFTNLILVFI MLSSAALAAE DPIRSHSFRN TILGYADYVF TGTFAFEIIL 180
  181 KMTTFGAFLH KGAFCRNYFN LLDMLVVGVS LVSFGIQSSA ISVVKILRVL RVLRPLRAIN 240
  241 RAKGLKHVVQ CVFVAIRTIG NIMIVTTLLQ FMFACIGVQL FKGKFYRCTD EAKSNP

Type	Start	End	Confidence
Cytoplasmic	1	129	0.82
Transmembrane Helix	130	149	0.89
Non-Cytoplasmic	150	167	0.65
Transmembrane Helix	168	189	0.67
Cytoplasmic	190	198	0.47
Transmembrane Helix	199	224	0.76
Non-Cytoplasmic	225	252	0.54
Transmembrane Helix	253	281	0.66
Cytoplasmic	282	296	0.54