YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CX3C1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSFPELDL ENFEYDDSAE ACYLGDIVAF GTIFLSIFYS LVFTFGLVGN LLVVLALTNS  60
   61 RKSKSITDIY LLNLALSDLL FVATLPFWTH YLISHEGLHN AMCKLTTAFF FIGFFGGIFF 120
  121 ITVISIDRYL AIVLAANSMN NRTVQHGVTI SLGVWAAAIL VASPQFMFTK RKDNECLGDY 180
  181 PEVLQEIWPV LRNSEVNILG FVLPLLIMSF CYFRIVRTLF SCKNRKKARA IRLILLVVVV 240
  241 FFLFWTPYNI VIFLETLKFY NFFPSCGMKR DLRWALSVTE TVAFSHCCLN PFIYAFAGEK 300
  301 FRRYLRHLYN KCLAVLCGRP VHAGFSTESQ RSRQDSILSS LTHYTSEGEG SLLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.93
Transmembrane Helix	35	57	0.90
Cytoplasmic	58	68	0.88
Transmembrane Helix	69	90	0.92
Non-Cytoplasmic	91	106	0.84
Transmembrane Helix	107	126	0.93
Cytoplasmic	127	142	0.84
Transmembrane Helix	143	163	0.88
Non-Cytoplasmic	164	196	0.92
Transmembrane Helix	197	216	0.94
Cytoplasmic	217	230	0.90
Transmembrane Helix	231	253	0.89
Non-Cytoplasmic	254	276	0.90
Transmembrane Helix	277	297	0.74
Cytoplasmic	298	354	0.72