YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALCR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	148	0.99
Transmembrane Helix	149	173	0.89
Cytoplasmic	174	186	0.79
Transmembrane Helix	187	203	0.95
Non-Cytoplasmic	204	268	0.95
Transmembrane Helix	269	290	0.91
Cytoplasmic	291	297	0.88
Transmembrane Helix	298	317	0.94
Non-Cytoplasmic	318	336	0.83
Transmembrane Helix	337	357	0.94
Cytoplasmic	358	375	0.86
Transmembrane Helix	376	396	0.90
Non-Cytoplasmic	397	415	0.83
Transmembrane Helix	416	432	0.91
Cytoplasmic	433	516	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLLLNRFT LLLLLLVSPT PVLQAPTNLT DSGLDQEPFL YLVGRKKLLD AQYKCYDRIQ  60
   61 QLPPYEGEGP YCNRTWDGWM CWDDTPAGVM SYQHCPDYFP DFDPTEKVSK YCDENGEWFR 120
  121 HPDSNRTWSN YTLCNAFTPD KLHNAYVLYY LALVGHSMSI AALIASMGIF LFFKNLSCQR 180
  181 VTLHKNMFLT YILNSIIIII HLVEVVPNGD LVRRDPMHIF HHNTYMWTMQ WELSPPLPLS 240
  241 AHEGKMDPHD SEVISCKILH FFHQYMMACN YFWMLCEGIY LHTLIVMAVF TEDQRLRWYY 300
  301 LLGWGFPIVP TIIHAITRAV YYNDNCWLST ETHLLYIIHG PVMAALVVNF FFLLNIVRVL 360
  361 VTKMRQTHEA EAYMYLKAVK ATMVLVPLLG IQFVVFPWRP SNKVLGKIYD YLMHSLIHFQ 420
  421 GFFVATIYCF CNHEVQVTLK RQWAQFKIQW SHRWGRRRRP TNRVVSAPRA VAFAEPGGLP 480
  481 IYICHQEPRN PPVSNNEGEE GTEMIPMNVI QQDSSA