YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXCR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEIRVDNFS LEDFFSGDID SYNYSSDPPF TLSDAAPCPS ANLDINRYAV VVIYVLVTLL  60
   61 SLVGNSLVML VILYNRSTCS VTDVYLLNLA IADLFFALTL PVWAASKVNG WIFGSFLCKV 120
  121 FSFLQEITFY SSVLLLACIS MDRYLAIVHA TSTLIQKRHL VKFVCITMWF LSLVLSLPIF 180
  181 ILRTTVKANP STVVCYENIG NNTSKWRVVL RILPQTYGFL LPLLIMLFCY GFTLRTLFKA 240
  241 HMGQKHRAMR VIFAVVLVFL LCWLPYNIVL FTDTLMRTKL IKETCERQNE INKALEATEI 300
  301 LGFLHSCLNP IIYAFIGQKF RHGLLKIMAN YGLVSKEFLA KEGRPSFVGS SSANTSTTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.94
Transmembrane Helix	50	74	0.90
Cytoplasmic	75	83	0.88
Transmembrane Helix	84	105	0.93
Non-Cytoplasmic	106	126	0.79
Transmembrane Helix	127	146	0.85
Cytoplasmic	147	159	0.90
Transmembrane Helix	160	182	0.92
Non-Cytoplasmic	183	215	0.94
Transmembrane Helix	216	238	0.87
Cytoplasmic	239	247	0.95
Transmembrane Helix	248	270	0.88
Non-Cytoplasmic	271	359	0.64