YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAS_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQSNMTSFA EEKAMNTSSR NASLGTSHPP IPIVHWVIMS ISPLGFVENG ILLWFLCFRM  60
   61 RRNPFTVYIT HLSIADISLL FCIFILSIDY ALDYELSSGH YYTIVTLSVT FLFGYNTGLY 120
  121 LLTAISVERC LSVLYPIWYR CHRPKHQSAF VCALLWALSC LVTTMEYVMC IDSGEESHSQ 180
  181 SDCRAVIIFI AILSFLVFTP LMLVSSTILV VKIRKNTWAS HSSKLYIVIM VTIIIFLIFA 240
  241 MPMRVLYLLY YEYWSTFGNL HNISLLFSTI NSSANPFIYF FVGSSKKKRF RESLKVVLTR 300
  301 AFKDEMQPRR QEGNGNTVSI ETVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.97
Transmembrane Helix	33	57	0.90
Cytoplasmic	58	66	0.89
Transmembrane Helix	67	88	0.93
Non-Cytoplasmic	89	103	0.76
Transmembrane Helix	104	127	0.77
Cytoplasmic	128	147	0.84
Transmembrane Helix	148	169	0.91
Non-Cytoplasmic	170	185	0.91
Transmembrane Helix	186	210	0.89
Cytoplasmic	211	224	0.90
Transmembrane Helix	225	246	0.91
Non-Cytoplasmic	247	262	0.84
Transmembrane Helix	263	283	0.94
Cytoplasmic	284	324	0.99