YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FSHR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	365	0.99
Transmembrane Helix	366	388	0.91
Cytoplasmic	389	397	0.88
Transmembrane Helix	398	420	0.89
Non-Cytoplasmic	421	442	0.87
Transmembrane Helix	443	464	0.90
Cytoplasmic	465	484	0.90
Transmembrane Helix	485	507	0.88
Non-Cytoplasmic	508	527	0.93
Transmembrane Helix	528	552	0.90
Cytoplasmic	553	572	0.93
Transmembrane Helix	573	594	0.90
Non-Cytoplasmic	595	607	0.79
Transmembrane Helix	608	628	0.83
Cytoplasmic	629	692	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLLVSLLA FLGTGSGCHH WLCHCSNRVF LCQDSKVTEI PTDLPRNAIE LRFVLTKLRV  60
   61 IPKGSFAGFG DLEKIEISQN DVLEVIEADV FSNLPKLHEI RIEKANNLLY INPEAFQNLP 120
  121 SLRYLLISNT GIKHLPAVHK IQSLQKVLLD IQDNINIHIV ARNSFMGLSF ESVILWLSKN 180
  181 GIEEIHNCAF NGTQLDELNL SDNNNLEELP NDVFQGASGP VILDISRTKV HSLPNHGLEN 240
  241 LKKLRARSTY RLKKLPNLDK FVTLMEASLT YPSHCCAFAN LKRQISELHP ICNKSILRQD 300
  301 IDDMTQIGDQ RVSLIDDEPS YGKGSDMMYN EFDYDLCNEV VDVTCSPKPD AFNPCEDIMG 360
  361 YNILRVLIWF ISILAITGNT TVLVVLTTSQ YKLTVPRFLM CNLAFADLCI GIYLLLIASV 420
  421 DIHTKSQYHN YAIDWQTGAG CDAAGFFTVF ASELSVYTLT AITLERWHTI THAMQLECKV 480
  481 QLRHAASVMV LGWTFAFAAA LFPIFGISSY MKVSICLPMD IDSPLSQLYV MALLVLNVLA 540
  541 FVVICGCYTH IYLTVRNPTI VSSSSDTKIA KRMATLIFTD FLCMAPISFF AISASLKVPL 600
  601 ITVSKAKILL VLFYPINSCA NPFLYAIFTK NFRRDFFILL SKFGCYEMQA QIYRTETSSA 660
  661 THNFHARKSH CSSAPRVTNS YVLVPLNHSS QN