YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149067889, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.55
Transmembrane Helix	94	115	0.71
Non-Cytoplasmic	116	123	0.44
Transmembrane Helix	124	145	0.75
Cytoplasmic	146	147	0.42
Transmembrane Helix	148	172	0.71
Non-Cytoplasmic	173	179	0.58
Transmembrane Helix	180	202	0.88
Cytoplasmic	203	210	0.67
Transmembrane Helix	211	231	0.93
Non-Cytoplasmic	232	279	0.74
Transmembrane Helix	280	303	0.69
Cytoplasmic	304	343	0.82
Transmembrane Helix	344	364	0.89
Non-Cytoplasmic	365	370	0.72
Transmembrane Helix	371	393	0.89
Cytoplasmic	394	411	0.84
Transmembrane Helix	412	431	0.82
Non-Cytoplasmic	432	438	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSESSWRR LEDSEREETD SEPQTPPLDN LSVLWKNAVG FWILGLCNNF SYVVMLSAAH  60
   61 DILKQEQASG NQSHVEPGPT PMPHNSSSRF DCNSISTAAV LLADILPTLV IKLLAPLGLH 120
  121 LLPYSPRVLV SGVCSAGSFV LVAFSQSVGL SLCGVVLASI SSGLGEVTFL SLTAFYPSAV 180
  181 ISWWSSGTGG AGLLGSLSYL GLTQAGLSPQ HTLLSMLGIP VLMLASYFLL LTSPEPLDPG 240
  241 GQDEAETAAR QPLIGTETPE SRPGTSWDLS LQERWTVFKG LLRYIIPLVL VYFAEYFINQ 300
  301 GLFELLFFRN TSLSHAQQYR WYQMLYQAGV FASRSSLQCC RIRFTWILAL LQCLNLAFLL 360
  361 ADVCLTFLPS IYLIFIVILY EGLLGGAAYV NTFHNIALET SDKHREFAME AACISDTLGI 420
  421 SLSGVLALPL HDFLCHLP