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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MDR3_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEAARNGT ARRLDGDFEL GSISNQSREK KKKVNLIGPL TLFRYSDWQD KLFMLLGTAM  60
   61 AIAHGSGLPL MMIVFGEMTD KFVDNAGNFS LPVNFSLSML NPGRILEEEM TRYAYYYSGL 120
  121 GGGVLLAAYI QVSFWTLAAG RQIRKIRQKF FHAILRQEMG WFDIKGTTEL NTRLTDDISK 180
  181 ISEGIGDKVG MFFQAIATFF AGFIVGFIRG WKLTLVIMAI TAILGLSTAV WAKILSTFSD 240
  241 KELAAYAKAG AVAEEALGAI RTVIAFGGQN KELERYQKHL ENAKKIGIKK AISANISMGI 300
  301 AFLLIYASYA LAFWYGSTLV ISKEYTIGNA MTVFFSILIG AFSVGQAAPC IDAFPNARGA 360
  361 AYVIFDIIDN NPKIDSFSER GHKPDSIKGN LEFSDVHFSY PSRANIKILK GLNLKVKSGQ 420
  421 TVALVGNSGC GKSTTVQLLQ RLYDPTEGTI SIDGQDIRNF NVRCLREFIG VVSQEPVLFS 480
  481 TTIAENIRYG RGNVTMDEIK KAVKEANAYD FIMKLPQKFD TLVGDRGAQL SGGQKQRIAI 540
  541 ARALVRNPKI LLLDEATSAL DTESEAEVQA ALDKAREGRT TIVIAHRLST VRNADVIAGF 600
  601 EDGVIVEQGS HSELIKKEGI YFRLVNMQTS GSQILSEEFE VELSDEKAAG GVAPNGWKAR 660
  661 IFRNSTKKSL KSSRAHQNRL DVETNELDAN VPPVSFLKVL RLNKTEWPYF VVGTLCAIAN 720
  721 GALQPAFSII LSEMIAIFGP GDDTVKQQKC NMFSLVFLGL GVHSFFTFFL QGFTFGKAGE 780
  781 ILTTRLRSMA FKAMLRQDMS WFDDHKNSTG ALSTRLATDA AQVQGATGTR LALIAQNTAN 840
  841 LGTGIIISFI YGWQLTLLLL SVVPFIAVAG IVEMKMLAGN AKRDKKEMEA AGKIATEAIE 900
  901 NIRTVVSLTQ ERKFESMYVE KLHGPYRNSV RKAHIYGITF SISQAFMYFS YAGCFRFGSY 960
  961 LIVNGHMRFK DVILVFSAIV LGAVALGHAS SFAPDYAKAK LSAAYLFSLF ERQPLIDSYS1020
 1021 REGMWPDKFE GSVTFNEVVF NYPTRANVPV LQGLSLEVKK GQTLALVGSS GCGKSTVVQL1080
 1081 LERFYDPMAG TVLLDGQEAK KLNVQWLRAQ LGIVSQEPIL FDCSIAKNIA YGDNSRVVSQ1140
 1141 DEIVRAAKEA NIHPFIETLP QKYETRVGDK GTQLSGGQKQ RIAIARALIR QPRVLLLDEA1200
 1201 TSALDTESEK VVQEALDKAR EGRTCIVIAH RLSTIQNADL IVVIDNGKVK EHGTHQQLLA1260
 1261 QKGIYFSMVN IQAGTQNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle