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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34881747, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLSTPSRP SRVTTLKRTA VVLALTAYGV HKIYPLVRQC LTPARGPQVP AGESTQEASG  60
   61 ATTAKAGMNR VFLQRLLVLL RLLFPGVLCR ETGLLALHSA ALVSRTFLSV YVARLDGRLA 120
  121 RCIVRKDPRA FSWQLLQWLL IALPATFINS AIRYLEGQLA LSFRSRLVAH AYGLYFSQQT 180
  181 YYRVSNMDGR LRNPDQSLTE DMVAFAASVA HLYSNLTKPL LDVAVTSYTL LRAARSRGAG 240
  241 TAWPSAIAGL VVFLTANVLR AFSPKFGELV AEEARRKGEL RYMHSRVVAN SEEIAFYGGH 300
  301 EVELALLQHS YQDLASQINL ILLERLWYVM LEQFLMKYVW SASGLLMVAV PIITATGYAE 360
  361 SDSEAMKKAA LEMKEEELVS ERTEAFTIAR NLLTAAADAT ERIMSSYKEV TELAGYTARV 420
  421 YEMFQVFEDV QHCRFKRTGD LEEAQAGPGS MVHSGVHIEG PLKIQGQVVD VEQGIICENI 480
  481 PIITPTGEVV VASLNIRVEE GMHLLITGPN GCGKSSLFRI LGGLWPTYSG VLYKPPPQRM 540
  541 FYIPQRPYMS VGSLRDQVIY PDSAEDMRRK GCSEQQLEAI LGIVHLRHIL QREGGWEAVC 600
  601 DWKDVLSGGE KQRIGMARMF YHRPKYALLD ECTSAVSIDV EGKIFQAAKD AGISLLSITH 660
  661 RPSLWKYHTH LLQFDGEGGW KFEKLDSAAR LSLTEEKQRL EQQLAGIPKM QGRLQELRQI 720
  721 LGEAAAPVQP LVPGIPT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle