YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CH25H_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACHNVSELQ DLGCSNQLLL QPLWDSIRTG EASARSPFFP VIFSIFTYLG FCLPFVVLDV  60
   61 LCPWVPILRR YKIHPDFSPS VRQLLPCLGL TLYQHLVFVF PVTLMHWARS PALLPREAPE 120
  121 LSQLLSHVLI CLLLFDTEIF AWHLLHHKVP WLYRTFHKVH HQNSSSFALA TQYMSVWELL 180
  181 SLTFFDVLNV AMLQCHPLTI LVFHVVNIWL SVEDHSGYDF PWSTHRLVPF GWYGGVAHHD 240
  241 LHHSQFNCNF APYFTHWDKM LGTLRCAPHS KRLCAGSESC LDSGEQCTVH LNQKKKQT

Type	Start	End	Confidence
Cytoplasmic	1	37	0.70
Transmembrane Helix	38	58	0.86
Non-Cytoplasmic	59	83	0.63
Transmembrane Helix	84	108	0.80
Cytoplasmic	109	123	0.66
Transmembrane Helix	124	146	0.88
Non-Cytoplasmic	147	181	0.62
Transmembrane Helix	182	206	0.54
Cytoplasmic	207	298	0.75