YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GIPR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	136	0.99
Transmembrane Helix	137	159	0.91
Cytoplasmic	160	167	0.90
Transmembrane Helix	168	186	0.64
Non-Cytoplasmic	187	223	0.59
Transmembrane Helix	224	243	0.56
Cytoplasmic	244	254	0.84
Transmembrane Helix	255	274	0.96
Non-Cytoplasmic	275	294	0.90
Transmembrane Helix	295	317	0.90
Cytoplasmic	318	335	0.90
Transmembrane Helix	336	354	0.89
Non-Cytoplasmic	355	370	0.82
Transmembrane Helix	371	392	0.89
Cytoplasmic	393	455	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLLLLLL WLWGLSLQRA ETDSEGQTTG ELYQRWERYG WECQNTLEAT EPPSGLACNG  60
   61 SFDMYACWNY TAANTTARVS CPWYLPWYRQ VAAGFVFRQC GSDGQWGSWR DHTQCENPEK 120
  121 NGAFQDQKLI LERLQVVYTV GYSLSLATLL LALLILSLFR RLHCTRNYIH MNLFTSFMLR 180
  181 AGAILTRDQL LPPLGPYTGN QTPTLWNQAL AACRTAQILT QYCVGANYTW LLVEGVYLHH 240
  241 LLVVVRRSEK GHFRCYLLLG WGAPALFVIP WVIVRYLYEN TQCWERNEVK AIWWIIRTPI 300
  301 LITILINFLI FIRILGILVS KLRTRQMRCP DYRLRLARST LTLMPLLGVH EVVFAPVTEE 360
  361 QAEGSLRFAK LAFEIFLSSF QGFLVSVLYC FINKEVQSEI RRLRLSLQEQ CPRPHLGQAP 420
  421 RAVPLSSAPQ EAAIRNALPS GMLHVPGDEV LESYC