YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IMPA1_RAT
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPWQECMD YAVILARQAG EMIREALKNK MDVMIKSSPA DLVTVTDQKV EKMLMSSIKE  60
   61 KYPYHSFIGE ESVASGEKTV FTEQPTWIID PIDGTTNFVH RFPFVAVSIG FVVNKEMEFG 120
  121 VVYSCVEDKM YTGRKGKGAF CNGQKLRVSQ QEDITKSLLV TELGSSRKPE TLRIVLSNME 180
  181 RLCSIPIHGI RSVGTAAVNM CLVATGGADA YYEMGIHCWD MAGAGIIVIE AGGVLLDVTG 240
  241 GPFDLMSRRI IAASNIALAE RIAKELEIIP LQRDDES

Type	Start	End	Confidence
Cytoplasmic	1	186	0.81
Transmembrane Helix	187	208	0.73
Non-Cytoplasmic	209	220	0.77
Transmembrane Helix	221	241	0.75
Cytoplasmic	242	277	0.77