YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HG2A_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQRDLISN HEQLPILGQR ARAPESNCNR GVLYTSVSVL VALLLAGQAT TAYFLYQQQG  60
   61 RLDKLTVTSQ NLQLENLRMK LPKSAKPVSP MRMATPLLMR PLSMDNMLQA PVKNVTKYGN 120
  121 MTQDHVMHLL TKSGPVNYPQ LKGSFPENLK HLKNSMNGLD WKVFESWMKQ WLLFEMSKNS 180
  181 LEEKQPTQTP PKVLTKCQEE VSHIPDVHPG AFRPKCDENG NYMPLQCHGS TGYCWCVFPN 240
  241 GTEVPHTKSR GRHNCSEPLD MEDPSSGLGV TKQDMGQMFL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.81
Transmembrane Helix	31	52	0.79
Non-Cytoplasmic	53	280	0.97