YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189181652, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALGGDGLR LLSVSRPERQ PESAALSSPG PGLCCWVSVF SCFSLACSYV GSLYVWKSEL  60
   61 PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS LLTLMGFRLE GIFPAALLPL 120
  121 LLTMILFLGP LMQLCMDCPC DLTDGLKVVL APRSWARRLT DMRWLRNQVI APLTEELVFR 180
  181 ACMLPMLAPC TGLGPAVFTC PLFFGVAHFH HIIEQLRFRQ SSVGSIFLSA AFQFSYTAVF 240
  241 GAYTAFLFIR TGHLIGPVLC HSFCNYMGFP AVCAALEHPQ KWPLLAGYAL GVGLFLLLLQ 300
  301 PLTDPKLYGS LPLCMLLERT GASETLLCS

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.67
Transmembrane Helix	33	56	0.84
Cytoplasmic	57	71	0.68
Transmembrane Helix	72	92	0.88
Non-Cytoplasmic	93	110	0.62
Transmembrane Helix	111	131	0.87
Cytoplasmic	132	186	0.60
Transmembrane Helix	187	212	0.78
Non-Cytoplasmic	213	222	0.45
Transmembrane Helix	223	249	0.79
Cytoplasmic	250	253	0.38
Transmembrane Helix	254	276	0.75
Non-Cytoplasmic	277	283	0.36
Transmembrane Helix	284	303	0.90
Cytoplasmic	304	329	0.45