YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192447415, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKVHGELP DKLVTAGKPF LRSCVSFGQM SCKKWLLVCF LVPGIALMIY LGHSPLTKPW  60
   61 HHASVQREAQ RPNADSPNTE EDPGLYHVAY PRNYKFIINQ PGICEERKPY VVIIVPVPPH 120
  121 DFNARNGIRN TWAGEKVVEG KEVLVLFILG LHSGDDEETL QEQLRNESQQ YKDLLQSNFQ 180
  181 DSYRNLTIKT MMMMEWLSRD CQQASYAVKV DADVLLNVNN LINMLVSLNT VQSNYMTGLV 240
  241 WDASPVIRDS SNKFFLPYDV YPKYAYPPYP LGMCYIISLD LPQKFLKESK KIKPLYIEDA 300
  301 YLGMCLEHLG IAPVKPPNMD QFVVKPPQYN RCYFSRLIAV LTDNTNQMTS FWTDIHLTSS 360
  361 PC

Type	Start	End	Confidence
Cytoplasmic	1	34	0.89
Transmembrane Helix	35	54	0.88
Non-Cytoplasmic	55	362	0.98