YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT7_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLSIKDDE YKPAKFNLVV KLSGWFRSIL ADKTSRNLFF FLCLNLSFAF VELLYGIWSN  60
   61 SLGLISDSFH MFFDCTALLA GLAASVISRW RSNDSFSYGY VRAEVLAGFV NGLFLIFTAF 120
  121 FIFSEGVERA LEPPDVHHDR LLPVSIAGLL VNLVGIFVFQ HGGHGHSHGG DDHGHSHSLF 180
  181 NGSAAHGHSH GGHGHSHGGH GHSHESKHGH DHGHSHGGHG HSHDDQHCHD DHTLTPGKGS 240
  241 SKQILQGVFL HIVADTLGSV GVIISAILMQ KYDLMIADPI CSMLIALLIG VSVVPLLRES 300
  301 IGILMQRTPP SLDHALPECY QRVQQLQGVY NLQEPHFWTL CTDVYIGTLK LLVAPDADSR 360
  361 WILSQTHNIF TQVGVRQLYV QIEVAAM

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	58	0.93
Non-Cytoplasmic	59	68	0.86
Transmembrane Helix	69	90	0.90
Cytoplasmic	91	99	0.90
Transmembrane Helix	100	123	0.86
Non-Cytoplasmic	124	140	0.90
Transmembrane Helix	141	159	0.95
Cytoplasmic	160	246	0.96
Transmembrane Helix	247	268	0.94
Non-Cytoplasmic	269	275	0.80
Transmembrane Helix	276	297	0.95
Cytoplasmic	298	387	0.97