YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192452517, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTSDIERA EYASGSLPLT EYNASFTVNR TNLSWTDFQD LGDKPDFMGD GSAVLRIIIS  60
   61 IIYSVVCALG LIGNILVLYL MKSKQAWKKS SINLFVTSLA VTDFQFVLTL PFWAVENAMD 120
  121 FTWLFGKAMC KIVSYVTATN MYASVFFLTA MSVARYCSVA SALKSKRRRL RFSAQWMTVI 180
  181 IWIAAVGAAL PNAIFSTTAT VSNEELCLVK FPDRSGDAQF WLGLYHAQKV LLGFLIPFGI 240
  241 ISICYLLLLR FITNKNINTS SAKRRSKVTR SVTIVVLSFF LCWLPNQALT AWGILIKLNV 300
  301 VHFSYEYYTT QVYIFPVTVC LAHSNSCLNP ILYCLMRREF RKALKKLFWQ ITSPSVTNMR 360
  361 PFTASTKPEQ DEQAPALIPL SPAEPALVFY PPGVVIYNGR NDLLPNST

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.96
Transmembrane Helix	57	80	0.92
Cytoplasmic	81	91	0.92
Transmembrane Helix	92	115	0.91
Non-Cytoplasmic	116	137	0.87
Transmembrane Helix	138	159	0.83
Cytoplasmic	160	173	0.87
Transmembrane Helix	174	195	0.88
Non-Cytoplasmic	196	229	0.94
Transmembrane Helix	230	252	0.92
Cytoplasmic	253	271	0.90
Transmembrane Helix	272	294	0.88
Non-Cytoplasmic	295	311	0.93
Transmembrane Helix	312	335	0.91
Cytoplasmic	336	408	0.97