YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192455660, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASESVSVLF KLYCLTVMTL IAATYTVALR YTRTVSTELY FSTTAVCLAE IIKLLLSLIM  60
   61 LVRETGDVGR CRAALVTHIF RSPKELLKLS VPSVVYAIQN NMAFVALSNL DAAVYQVTYQ 120
  121 LKIPCTALCT VLMLNRSLSR LQWFSVFMLC AGVTLVQWTP PHSTKVQVEQ NPFLGFMAIA 180
  181 VAVLCSGFAG VYFEKVLKSS DTSLWVRNIQ MYLSGIAVTL MGVYMTDGAR VLEKGFFYGY 240
  241 TPWVCLVVFL ASVGGMYTSV VVKYTDNIMK GFSAAAAIVL STVASVLLFG LQITLTFISG 300
  301 ALLVCVSIYL YGLPKQDTTK VMKAGAEQDD THKLISV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	38	0.78
Transmembrane Helix	39	62	0.82
Cytoplasmic	63	140	0.92
Transmembrane Helix	141	160	0.92
Non-Cytoplasmic	161	172	0.88
Transmembrane Helix	173	193	0.95
Cytoplasmic	194	203	0.91
Transmembrane Helix	204	226	0.84
Non-Cytoplasmic	227	238	0.80
Transmembrane Helix	239	261	0.91
Cytoplasmic	262	267	0.90
Transmembrane Helix	268	289	0.88
Non-Cytoplasmic	290	294	0.66
Transmembrane Helix	295	313	0.92
Cytoplasmic	314	337	0.93