YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125845726, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSWCFLLVG DLLIFICGVY GGETQSSEQN QQCVETFHHP GRENFVLHTE ESIEAGAVFL  60
   61 ANPSVAREDA CMAACCKDAR CNLALVENQA SDNNCFLFNC LYKHRFVCKF TPKQGFTNYI 120
  121 LSSVYEKYLS GRKSEGKDSP PIANAGRDVV VQPNEDVLLN GNESWDDKEI VNYEWSLIRG 180
  181 NKSVHMEKTN FRDQIRVSNL IPGVYEFKLT VTDSADHSDS AQVIVLVLTS EQSERHCLTP 240
  241 KKTGPCRASF IRWNYNAASR RCEQFIFGGC MENSNNYLSE TECQNACENT TVRAGGVTRK 300
  301 VPVEDCSSPC GVDSFKCSSG CCVKKEFECD GHQECSDGSD EKNCQQLNES LTRLLKIEVN 360
  361 KKAHCTDPPA TGPCRAHFHH WYYDPLSKKC HPFTYGGCDG NRNNFETADK CMKNCSGVTD 420
  421 KDVFARGLLV RGEELGESQS ASVALAVVLA VAILAVLAVL GYFYLKNRRK HQHQRVATSN 480
  481 PPVGGSEDDQ QMVYSSTTAK A

Type	Start	End	Confidence
Signal Peptide	1	21	0.87
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	442	0.99
Transmembrane Helix	443	465	0.95
Cytoplasmic	466	501	0.99