YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169145620, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAKLKYLS LGVLVFQTTS LVLTMRYSRT LQGDGPRYLA SSAVVVAEFL KILTCVGLVF  60
   61 KENSYSGRAL SSIMRQEIIH KPVETLKLAI PSGIYTLQNN LLYVALSNLD AATYQVTYQL 120
  121 KILTTALFSV SMLGRRLGVY QWLSLLILMA GVAFVQWPTD SPADPQKEHL TAGSQFVGLV 180
  181 AVLVACCSSG FAGVYFEKIL KETKQSVWVR NIQLGLFGLV FGVFGMLAYD GDRVREHGMF 240
  241 QGYNTLTWIV VALQALGGLV IAAVIKYADN ILKGFATSLS IILSTLISYF LLEDFEPTSV 300
  301 FFLGAILVIM ATFLYGYENK PPSNPSRA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.82
Transmembrane Helix	8	28	0.71
Non-Cytoplasmic	29	37	0.66
Transmembrane Helix	38	60	0.65
Cytoplasmic	61	137	0.92
Transmembrane Helix	138	157	0.94
Non-Cytoplasmic	158	175	0.86
Transmembrane Helix	176	196	0.95
Cytoplasmic	197	206	0.93
Transmembrane Helix	207	229	0.90
Non-Cytoplasmic	230	244	0.92
Transmembrane Helix	245	265	0.93
Cytoplasmic	266	271	0.82
Transmembrane Helix	272	292	0.92
Non-Cytoplasmic	293	298	0.86
Transmembrane Helix	299	317	0.97
Cytoplasmic	318	328	0.95