YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126540616, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIISNANHD FSNLSVSDDS SLDHIFTEIP ETETIKGVYY QRAQFIRRPE DLNLVDHGLQ  60
   61 ALINVGGNRY TFPWSTLEQF PLTRLGRLKP CSSPEEIARV CDDYDEARHE FFFDRSPNAF 120
  121 RVILNFLAAG KLRLLREMCA LSLHEELNYW GVEMTYMERC CKRKMYTRLE EVAELERREE 180
  181 ERRQRNLQLR PPIVETRYRK FMNQLRDMVE NPQSGVPGKV FACFSVLMVA ITVISLCIST 240
  241 MPDLREEENR GVCSQKCQHM FIIETVCVAW FSLEFLLRFV QARSKLQFLR GPLNIIDAMA 300
  301 ILPYYVSLVV DEKPNDENER PSGGKGYLDK LGLVLRILRA LRILYVMRLA RHSLGLQTLG 360
  361 LTVRRSTREF GLLLLFLCVA VTLFSPLVHL AESELTGVQD FSSIPASYWW AIISMTTVGY 420
  421 GDMVPRSIPG QVVALSSILS GILIMAFPAT SIFHMFSRSY QELKQEHDRL FKEECAAAAA 480
  481 ATTGLEEEQD GGWVAFPPPR LVLTPDTETA GSCEDLSLLG NGGETSGNNK HPLPAGAF

Type	Start	End	Confidence
Cytoplasmic	1	219	0.61
Transmembrane Helix	220	241	0.83
Non-Cytoplasmic	242	259	0.60
Transmembrane Helix	260	280	0.68
Cytoplasmic	281	369	0.84
Transmembrane Helix	370	391	0.92
Non-Cytoplasmic	392	405	0.84
Transmembrane Helix	406	424	0.85
Cytoplasmic	425	431	0.79
Transmembrane Helix	432	455	0.89
Non-Cytoplasmic	456	538	0.89