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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PLB1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESWPGVSLV GLLLLLLLGQ GPSQIHGSSG ENTSQPQQVF RTLKNFSFPC KPKKLELSVL  60
   61 SKSVHSLRPS DIKLVAAIGN LETPPAPGSG VVNMEKPQSL ESELQNVCIG IMTALSDIIR 120
  121 HFNPSVLMPT CSPGKGTAGH TTIAEDLWIQ AKELVRHLKD NPELDFEKDW KLITVLFSNT 180
  181 SQCHLCSSDQ QKRHLMKHME MLSGVLDYLH REVPRAFVNL VDLSEVLTMA QQHQETGFSP 240
  241 APEICKCSEE ITKLSKAVMQ WSYQEAWEDL LASSKFNKHE TFAVVFQSFF SEVELPLERP 300
  301 SPQDSTTLAL RIWNSMMEPV GRKDGTLNEA ERKTMKCPSQ ESPYLFTYRN SNYQARQLKP 360
  361 IGKFQMKEGT KFTCPDKDPS DSIPTTVHRL RPADIKVIGA MGDSLTAGNG AGSSPGNVLD 420
  421 VLTQYRGLSW SVGGDETIET VTTLANILRE FNPSLKGFSV GTGKENTPRA SFNQAVAGAK 480
  481 SDGLAAQAKK LVSLMKDDKT INFQEDWKII TVFIGGNDLC GSCNNLARFS PQTFTDNIKT 540
  541 ALDILHAEVP RAFVNMVSVI EITPLRELFN EPKVSCPRMI LRSLCPCVLN LGENSAELAQ 600
  601 LVERNRQYQE ETGKLIESGR YDTRDDFTVV LQPMFENVVM PRTLEGLPDS SFFAPDCFHF 660
  661 NVKTHARSAI ALWKNMLEPV GRKTRHQNFE IKVPIMCPNQ TSPFLSTTKN SNLGHGTSMS 720
  721 CEEKAPSASP PTSVHTLRPA DIQVVAALGD SVTAGNGISS QEGDLADVTT QYRGLSYSAG 780
  781 GDKFLENVTT LPNILREFNG NLTGYSVGTG DVNSASAFLN QAVPGAKAEN LASQVQTLIQ 840
  841 KMKNDTRVNF HQDWKVITVM IGASDLCDFC KDSNRYSAAN FSDHLRNALD ILHKEVPRAL 900
  901 VNLVDFMNPS IIRQVFLKNP DKCPVNQTSV LCNCVLTPGE DSHELARLEA FTKSYQSSML 960
  961 QLVESGRYDT REDFSVVLQP FLFNIRLPIL ENGNPDTSFF APDCILLSQK FHTQLARALW1020
 1021 ANMLEPLGKK MDTLDPKELI ALACPTKDKP FLRTFRNSNY TYPIKPAIEN WGSDFLCTEQ1080
 1081 SPSSKVPTSV HELRPSDIKV VAAMGDFLTT ATGARPSESS SLDTPWRGLS WSIGGDGTLE1140
 1141 THTTLPNILK KFNPSILGFS TGTLENTAGL NVAEEGARAQ DMPAQAQALV KKMKSTPTIN1200
 1201 IQEDWKLITL LIGNNDLCLY CEDPENYSTR EYVKYIQHAL DIFYEELPRV FINVVEVMEL1260
 1261 SGLLHDQGGK CAMPLAVQKN CSCLKRSQNL MAMQELKKVN GNLQSALSEL SYWHRYMQRE1320
 1321 DFAVTVQPFF RNTFVPLDER GGLDLTFFSE DCFHFSVRGH AEMAIALWNN MLEPVGKKTT1380
 1381 SNNFTYNRTK LKCPSPENPF LYTVRNSQIL LDKAKENSNT LYWAVPVAAV GGLVVGILGM1440
 1441 MLWRTVRLVQ 

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