YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A5_RAT, S6A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	199	0.87
Transmembrane Helix	200	221	0.83
Non-Cytoplasmic	222	230	0.65
Transmembrane Helix	231	253	0.86
Cytoplasmic	254	267	0.70
Transmembrane Helix	268	302	0.76
Non-Cytoplasmic	303	393	0.81
Transmembrane Helix	394	414	0.86
Cytoplasmic	415	422	0.80
Transmembrane Helix	423	445	0.81
Non-Cytoplasmic	446	472	0.74
Transmembrane Helix	473	493	0.89
Cytoplasmic	494	504	0.78
Transmembrane Helix	505	527	0.89
Non-Cytoplasmic	528	563	0.88
Transmembrane Helix	564	585	0.90
Cytoplasmic	586	605	0.88
Transmembrane Helix	606	628	0.89
Non-Cytoplasmic	629	637	0.86
Transmembrane Helix	638	660	0.94
Cytoplasmic	661	678	0.94
Transmembrane Helix	679	701	0.91
Non-Cytoplasmic	702	717	0.94
Transmembrane Helix	718	741	0.91
Cytoplasmic	742	799	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCSAPKEMN KPPTNILEAT VPGHRDSPRA PRTSPEQDLP AAAPAAAVQP PRVPRSASTG  60
   61 AQTFQSADAR ACEAQRPGVG FCKLSSPQAQ ATSAALRDLS EGHSAQANPP SGAAGAGNAL 120
  121 HCKIPALRGP EEDENVSVAK GTLEHNNTPP VGWVNMSQST VVLGTDGIAS VLPGSVATTT 180
  181 IPEDEQGDEN KARGNWSSKL DFILSMVGYA VGLGNVWRFP YLAFQNGGGA FLIPYLMMLA 240
  241 LAGLPIFFLE VSLGQFASQG PVSVWKAIPA LQGCGIAMLI ISVLIAIYYN VIICYTLFYL 300
  301 FASFVSVLPW GSCNNPWNTP ECKDKTKLLL DSCVIGDHPK IQIKNSTFCM TAYPNLTMVN 360
  361 FTSQANKTFV SGSEEYFKYF VLKISAGIEY PGEIRWPLPF CLFLAWVIVY ASLAKGIKTS 420
  421 GKVVYFTATF PYVVLVILLI RGVTLPGAGA GIWYFITPKW EKLTDATVWK DAATQIFFSL 480
  481 SAAWGGLITL SSYNKFHNNC YRDTLIVTCT NSATSIFAGF VIFSVIGFMA NERKVNIENV 540
  541 ADQGPGIAFV VYPEALTRLP LSPFWAIIFF LMLLTLGLDT MFATIETIVT SISDEFPKYL 600
  601 RTHKPVFTLG CCICFFIMGF PMITQGGIYM FQLVDTYAAS YALVIIAIFE LVGISYVYGL 660
  661 QRFCEDIEMM IGFQPNIFWK VCWAFVTPTI LTFILCFSFY QWEPMTYGSY RYPNWSMVLG 720
  721 WLMLACSVIW IPIMFVIKMY LAPGRFIERL KLVCSPQPDW GPFLAQHRGE RYKNMIDPLG 780
  781 TSSLGLKLPV KDLELGTQC