YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190338849, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPTVTVSD FSERYPLFLH NSSFLEEPAG LLSNWSGGSS ELKAVRGSSA VAIAVSITAL  60
   61 YSVICVVGLV GNVLVMYGVV RYTKMKTATN IYIFNLALAD ALATSTLPFQ SAKYLMGTWP 120
  121 FGELLCKVVI AIDYYNMFTS IFTLTMMSVD RYIAVCHPVR ALDFRTPVKA KIINICVWIL 180
  181 SSAVGFPVMV MAVTKELDSG KTICMLKFPD PEWYWDTVTK ICVFIFAFVF PVLVITVCYG 240
  241 LMILRLKSVR LLSGSKEKDR NLRRITRMVL VVVAAFIICW TPIHIFIIVK TVVEIDQKNL 300
  301 LVVACWHLCI ALGYMNSSLN PVLYAFLDEN FKRCFREFCL PFRTRIEQNS FSKARSVIRE 360
  361 PISVCAKSES IKQPT

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.72
Transmembrane Helix	57	80	0.84
Cytoplasmic	81	90	0.72
Transmembrane Helix	91	112	0.79
Non-Cytoplasmic	113	130	0.77
Transmembrane Helix	131	154	0.69
Cytoplasmic	155	171	0.88
Transmembrane Helix	172	193	0.89
Non-Cytoplasmic	194	220	0.96
Transmembrane Helix	221	244	0.93
Cytoplasmic	245	264	0.95
Transmembrane Helix	265	288	0.91
Non-Cytoplasmic	289	302	0.90
Transmembrane Helix	303	326	0.74
Cytoplasmic	327	375	0.85