YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149058505, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTESWNSS WGTTMSWDYS GSGSLDQVEL CPAWELPYSH AIISALYLAA FVVGLTGNTF  60
   61 VVWLLSRRRR PRRLVDTFVL HLAAADLGFV LTLPLWAVAE ARGGLWPFGD GLCKISSFAL 120
  121 AATRCAGALL LAGMSVDRYL AVGRPLNARP LRSARCVRAS CSAVWAAAFL AGLPTLLYRR 180
  181 LQPSLDGEGS QCAEEPSDAL QGVGLLLLLL TFALPLAVTL TCYWRVSRRL LRVRRARGNS 240
  241 LRIIFTVESV FVGSWLPFSI LRALFYLARL RALPLPCSLL LALRWGLTVA TCLAFVHSCA 300
  301 NPVIYLLLDR SFRARVRFGP CTRVGRQVRR ISSASSLSRD DSSVFWGRSS KANSALAAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.94
Transmembrane Helix	43	65	0.93
Cytoplasmic	66	76	0.91
Transmembrane Helix	77	99	0.92
Non-Cytoplasmic	100	117	0.88
Transmembrane Helix	118	136	0.93
Cytoplasmic	137	155	0.84
Transmembrane Helix	156	178	0.89
Non-Cytoplasmic	179	202	0.94
Transmembrane Helix	203	224	0.93
Cytoplasmic	225	242	0.89
Transmembrane Helix	243	265	0.89
Non-Cytoplasmic	266	284	0.87
Transmembrane Helix	285	308	0.90
Cytoplasmic	309	359	0.99