YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHSTA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHQWLLLAA CFWVIFMFMV ASKFITLTFK DPDGYSAKQE FVFLTAMPEA EKLRGEKHFS  60
   61 EVMKPTGKML SESHPDQPPV YLERLELIRN ACKEEALRNL SHTEVSKFVL DRIFVCDKHK 120
  121 ILFCQTPKVG NTQWKKVLIV LNGAFSSIEE IPENVVHDHE KNGLPRLSSF SKIGIQKRLK 180
  181 TYFKFFIVRD PFERLISAFK DKFVHNPRFE PWYRHEIAPG IIRKYRKNRT ETRGIQFEDF 240
  241 VRYLGDPNRR WLDLQFGDHI IHWVTYVKLC APCEIKYSVI GHHETLEADA PYILKEAGID 300
  301 HLVSYPTIPP GITMYNRTKV EQYFLGISKR DIRRLYARFE GDFKLFGYQK PDFLLN

Type	Start	End	Confidence
Signal Peptide	1	22	0.92
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	356	0.98