YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190338390, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENVSLIRN RTEVGQGRAW GSGAGARPAW VVMVLAGVLI FTSVVDVLGN VLVIISVLRN  60
   61 RKLRNAGNAF VVSLAFADLL VVCYPYPLVL HAMLHAGWLP GEMECKVSGF LMGASVIGSI 120
  121 FNITAIAINR YCFICQANTY EKIYGRAGTL VLLTLVWVLT AIAILPNLSL GSLTYDPRVY 180
  181 SCTFSQTTSA GYTIAVVTVH FLLPIAVVTF CYLRIWVLVL RVRRRVTTDV RPRLRPSELR 240
  241 HFLTMFVVFV LFAVCWAPLN LIGLAVAVDP PRVGPLVPDW LFVMSYFMAY FNSCLNAVVY 300
  301 GLLNQNFRRE YRRILLSLCK PRLFLQETSK GGTERSNKQS PGNNNNDDQP KANTI

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.95
Transmembrane Helix	29	54	0.87
Cytoplasmic	55	68	0.79
Transmembrane Helix	69	89	0.94
Non-Cytoplasmic	90	108	0.88
Transmembrane Helix	109	133	0.86
Cytoplasmic	134	142	0.96
Transmembrane Helix	143	165	0.87
Non-Cytoplasmic	166	193	0.89
Transmembrane Helix	194	218	0.87
Cytoplasmic	219	240	0.93
Transmembrane Helix	241	262	0.93
Non-Cytoplasmic	263	281	0.86
Transmembrane Helix	282	303	0.92
Cytoplasmic	304	355	0.98