YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPRX_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLFPAPYW EVLYGSHFQG NLSLLNETVP HHLLLNASHS AFLPLGLKVT IVGLYLAVCI  60
   61 GGLLGNCLVM YVILRHTKMK TATNIYIFNL ALADTLVLLT LPFQGTDILL GFWPFGNALC 120
  121 KTVIAIDYYN MFTSTFTLTA MSVDRYVAIC HPIRALDVRT SSKAQAVNVA IWALASVVGV 180
  181 PVAIMGSAQV EDEEIECLVE IPAPQDYWGP VFAICIFLFS FIIPVLIISV CYSLMIRRLR 240
  241 GVRLLSGSRE KDRNLRRITR LVLVVVAVFV GCWTPVQVFV LVQGLGVQPG SETAVAILRF 300
  301 CTALGYVNSC LNPILYAFLD ENFKACFRKF CCASSLHREM QVSDRVRSIA KDVGLGCKTS 360
  361 ETVPRPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.77
Transmembrane Helix	51	74	0.92
Cytoplasmic	75	84	0.87
Transmembrane Helix	85	105	0.91
Non-Cytoplasmic	106	124	0.79
Transmembrane Helix	125	148	0.70
Cytoplasmic	149	165	0.87
Transmembrane Helix	166	185	0.91
Non-Cytoplasmic	186	210	0.89
Transmembrane Helix	211	236	0.90
Cytoplasmic	237	257	0.96
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	295	0.84
Transmembrane Helix	296	319	0.71
Cytoplasmic	320	367	0.79