YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRFR2_RAT, CRF2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.92
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	119	0.97
Transmembrane Helix	120	141	0.94
Cytoplasmic	142	149	0.91
Transmembrane Helix	150	169	0.93
Non-Cytoplasmic	170	192	0.82
Transmembrane Helix	193	214	0.78
Cytoplasmic	215	224	0.79
Transmembrane Helix	225	245	0.95
Non-Cytoplasmic	246	266	0.92
Transmembrane Helix	267	289	0.90
Cytoplasmic	290	307	0.93
Transmembrane Helix	308	328	0.92
Non-Cytoplasmic	329	344	0.80
Transmembrane Helix	345	363	0.91
Cytoplasmic	364	411	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAALLLSLL EANCSLALAE ELLLDGWGEP PDPEGPYSYC NTTLDQIGTC WPQSAPGALV  60
   61 ERPCPEYFNG IKYNTTRNAY RECLENGTWA SRINYSHCEP ILDDKQRKYD LHYRIALIIN 120
  121 YLGHCVSVVA LVAAFLLFLV LRSIRCLRNV IHWNLITTFI LRNITWFLLQ LIDHEVHEGN 180
  181 EVWCRCVTTI FNYFVVTNFF WMFVEGCYLH TAIVMTYSTE HLRKWLFLFI GWCIPCPIIV 240
  241 AWAVGKLYYE NEQCWFGKEP GDLVDYIYQG PIILVLLINF VFLFNIVRIL MTKLRASTTS 300
  301 ETIQYRKAVK ATLVLLPLLG ITYMLFFVNP GEDDLSQIVF IYFNSFLQSF QGFFVSVFYC 360
  361 FFNGEVRSAL RKRWHRWQDH HALRVPVARA MSIPTSPTRI SFHSIKQTAA V