YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT5B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVSNLSGAT PGIAFPPGPE SCSDSPSSGR SMGSTPGGLI LSGREPPFSA FTVLVVTLLV  60
   61 LLIAATFLWN LLVLVTILRV RAFHRVPHNL VASTAVSDVL VAALVMPLSL VSELSAGRRW 120
  121 QLGRSLCHVW ISFDVLCCTA SIWNVAAIAL DRYWTITRHL QYTLRTRRRA SALMIAITWA 180
  181 LSALIALAPL LFGWGEAYDA RLQRCQVSQE PSYAVFSTCG AFYVPLAVVL FVYWKIYKAA 240
  241 KFRFGRRRRA VVPLPATTQA KEAPQESETV FTARCRATVA FQTSGDSWRE QKEKRAAMMV 300
  301 GILIGVFVLC WIPFFLTELV SPLCACSLPP IWKSIFLWLG YSNSFFNPLI YTAFNKNYNN 360
  361 AFKSLFTKQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.91
Transmembrane Helix	50	73	0.89
Cytoplasmic	74	89	0.74
Transmembrane Helix	90	111	0.88
Non-Cytoplasmic	112	129	0.85
Transmembrane Helix	130	150	0.92
Cytoplasmic	151	170	0.90
Transmembrane Helix	171	192	0.93
Non-Cytoplasmic	193	213	0.92
Transmembrane Helix	214	237	0.89
Cytoplasmic	238	296	0.98
Transmembrane Helix	297	317	0.93
Non-Cytoplasmic	318	334	0.84
Transmembrane Helix	335	354	0.82
Cytoplasmic	355	370	0.85