YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT5A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPINLTSF SLSTPSTLEP NRSLDTEALR TSQSFLSAFR VLVLTLLGFL AAATFTWNLL  60
   61 VLATILRVRT FHRVPHNLVA SMAISDVLVA VLVMPLSLVH ELSGRRWQLG RRLCQLWIAC 120
  121 DVLCCTASIW NVTAIALDRY WSITRHLEYT LRARKRVSNV MILLTWALSA VISLAPLLFG 180
  181 WGETYSELSE ECQVSREPSY TVFSTVGAFY LPLCVVLFVY WKIYKAAKFR MGSRKTNSVS 240
  241 PIPEAVEVKD ASQHPQMVFT VRHATVTFQT EGDTWREQKE QRAALMVGIL IGVFVLCWFP 300
  301 FFVTELISPL CSWDIPALWK SIFLWLGYSN SFFNPLIYTA FNRSYSSAFK VFFSKQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.66
Transmembrane Helix	41	62	0.90
Cytoplasmic	63	77	0.53
Transmembrane Helix	78	99	0.90
Non-Cytoplasmic	100	114	0.64
Transmembrane Helix	115	137	0.64
Cytoplasmic	138	159	0.89
Transmembrane Helix	160	179	0.95
Non-Cytoplasmic	180	201	0.91
Transmembrane Helix	202	224	0.88
Cytoplasmic	225	283	0.99
Transmembrane Helix	284	303	0.96
Non-Cytoplasmic	304	321	0.83
Transmembrane Helix	322	341	0.88
Cytoplasmic	342	357	0.89