YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGTR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNFSFAAT SRNITSSLPF DNLNATGTNE SAFNCSHKPA DKHLEAIPVL YYMIFVIGFA  60
   61 VNIVVVSLFC CQKGPKKVSS IYIFNLAVAD LLLLATLPLW ATYYSYRYDW LFGPVMCKVF 120
  121 GSFLTLNMFA SIFFITCMSV DRYQSVIYPF LSQRRNPWQA SYVVPLVWCM ACLSSLPTFY 180
  181 FRDVRTIEYL GVNACIMAFP PEKYAQWSAG IALMKNILGF IIPLIFIATC YFGIRKHLLK 240
  241 TNSYGKNRIT RDQVLKMAAA VVLAFIICWL PFHVLTFLDA LTWMGIINSC EVIAVIDLAL 300
  301 PFAILLGFTN SCVNPFLYCF VGNRFQQKLR SVFRVPITWL QGKRETMSCR KSSSLREMDT 360
  361 FVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.97
Transmembrane Helix	49	71	0.92
Cytoplasmic	72	80	0.89
Transmembrane Helix	81	102	0.94
Non-Cytoplasmic	103	118	0.84
Transmembrane Helix	119	140	0.90
Cytoplasmic	141	159	0.90
Transmembrane Helix	160	181	0.93
Non-Cytoplasmic	182	212	0.95
Transmembrane Helix	213	234	0.90
Cytoplasmic	235	253	0.94
Transmembrane Helix	254	275	0.94
Non-Cytoplasmic	276	297	0.82
Transmembrane Helix	298	321	0.82
Cytoplasmic	322	363	0.97