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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157817743, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLTELATA LGTFLGLLAV AAMAGPNMLP VHQRQKRDWI WNQMHIDEEK NESLPHYVGK  60
   61 IKSNVNRQNA KYVLQGEQAG KIFRVDADTG DVLAYERLDR EKVSEYFLTA LIVDKKTNKN 120
  121 LEQPSSFTVK VHDVNDNWPV FTHQVFNASV PEMSAIGTSV IRVTATDADD PTVAGHATVL 180
  181 YQMVKGNEYF AIDNSGLIFT KDKNLDRETR AEYKIVVEAQ DAQGLRGESG TATVLIRLED 240
  241 INDNFPIFTQ STYTFSVPED IRVGKPLGSL SVEDPDEPQN RMTKYSIMQG EYRDTFTIET 300
  301 DPDRNEGIIK PTKPLDYELI QQYTFHIEAT DPTIRLGYLS STAGKNKAKI IINVLDVDEP 360
  361 PVFQRRFYHF HLPENKKKPL IGTVVAKDPD KAQRSIGYSI RKTSDRGQYF RITKQGNIYN 420
  421 EKELDRETHA WYNLTVEANE LDSRGNPVGK ESIVQIYIEV LDENDNAPEF AQPYEPKVCE 480
  481 NAAQGKLVVQ ISATDKDVVP VNTKFKFALK NEDSNFTLIN NHDNTANITV KYGQFNREHT 540
  541 KFHYLPVLIS DNGMPSLTGT GTLTVAVCKC NEQGEFTFCE EMAAQAGVSI QALVAIFLCI 600
  601 LTITVITLLI FLRRRLRKQA HAHSKSALEI HEQLVTYDEE GGGEMDTTSY DVSVLNSVRT 660
  661 GSNKPLRSTM DARPAVYTQV QKPPRLAPSL HGGPREMATM IEVKKEEADN DGGGPPYDTL 720
  721 HIYGYEGTES IAESLSSLST NSSDSDIDYD FLNDWGPRFK MLAELYGSDP QEELII

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle