YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GRM6_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	578	0.99
Transmembrane Helix	579	601	0.93
Cytoplasmic	602	616	0.93
Transmembrane Helix	617	637	0.92
Non-Cytoplasmic	638	643	0.76
Transmembrane Helix	644	664	0.85
Cytoplasmic	665	687	0.82
Transmembrane Helix	688	711	0.83
Non-Cytoplasmic	712	742	0.90
Transmembrane Helix	743	764	0.90
Cytoplasmic	765	779	0.80
Transmembrane Helix	780	801	0.91
Non-Cytoplasmic	802	808	0.77
Transmembrane Helix	809	831	0.82
Cytoplasmic	832	871	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLPVLLLW LAWWLSQAGI ACGAGSVRLA GGLTLGGLFP VHARGAAGRA CGALKKEQGV  60
   61 HRLEAMLYAL DRVNADPELL PGVRLGARLL DTCSRDTYAL EQALSFVQAL IRGRGDGDEA 120
  121 SVRCPGGVPP LRSAPPERVV AVVGASASSV SIMVANVLRL FAIPQISYAS TAPELSDSTR 180
  181 YDFFSRVVPP DSYQAQAMVD IVRALGWNYV STLASEGNYG ESGVEAFVQI SREAGGVCIA 240
  241 QSIKIPREPK PGEFHKVIRR LMETPNARGI IIFANEDDIR RVLEATRQAN LTGHFLWVGS 300
  301 DSWGSKISPI LNLEEEAVGA ITILPKRASI DGFDQYFMTR SLENNRRNIW FAEFWEENFN 360
  361 CKLTSSGGQS DDSTRKCTGE ERIGQDSAYE QEGKVQFVID AVYAIAHALH SMHQALCPGH 420
  421 TGLCPAMEPT DGRTLLHYIR AVRFNGSAGT PVMFNENGDA PGRYDIFQYQ ATNGSASSGG 480
  481 YQAVGQWAEA LRLDMEVLRW SGDPHEVPPS QCSLPCGPGE RKKMVKGVPC CWHCEACDGY 540
  541 RFQVDEFTCE ACPGDMRPTP NHTGCRPTPV VRLTWSSPWA ALPLLLAVLG IMATTTIMAT 600
  601 FMRHNDTPIV RASGRELSYV LLTGIFLIYA ITFLMVAEPC AAICAARRLL LGLGTTLSYS 660
  661 ALLTKTNRIY RIFEQGKRSV TPPPFISPTS QLVITFGLTS LQVVGVIAWL GAQPPHSVID 720
  721 YEEQRTVDPE QARGVLKCDM SDLSLIGCLG YSLLLMVTCT VYAIKARGVP ETFNEAKPIG 780
  781 FTMYTTCIIW LAFVPIFFGT AQSAEKIYIQ TTTLTVSLSL SASVSLGMLY VPKTYVILFH 840
  841 PEQNVQKRKR SLKKTSTMAA PPQNENAEDA K