YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LECT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENSDKVPI TMVGPEDVEF CSPPAYATVT VKPSGSPTRL LKVGAVVLIS GAVLLLFGAI  60
   61 GAFYFWKGND NHIYNVHYTM SINGRLQDAS MEIDAANNLE TFKMGSGAEE AIEVNDFQNG 120
  121 ITGIRFAGGE KCYIKAQVKA RIPEVSTGTK QSISELEGKI MPVKYEENSL IWVAVDQPVK 180
  181 DNSFLSSKIL EFCGDLPIFW LKPMYPKEIP RERREVVRSS APSTTRRPHS EPRGNAGPGR 240
  241 LSNRTRPSVQ DDEEPFNPDN PYHQQEGESM TFDPRLDHEG ICCIECRRSY THCQKICEPL 300
  301 GGYYPWPYNY QGCRSACRVV MPCSWWVARI LGMV

Type	Start	End	Confidence
Cytoplasmic	1	42	0.89
Transmembrane Helix	43	66	0.90
Non-Cytoplasmic	67	334	0.92