YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TF_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPMRPRLL AALAPTFLGF LLLQVAVGAG TPPGKAFNLT WISTDFKTIL EWQPKPTNYT  60
   61 YTVQISDRSR NWKYKCTGTT DTECDLTDEI VKDVNWTYEA RVLSVPWRNS THGKETLFGT 120
  121 HGEEPPFTNA RKFLPYRDTK IGQPVIQKYE QGGTKLKVTV KDSFTLVRKN GTFLTLRQVF 180
  181 GNDLGYILTY RKDSSTGRKT NTTHTNEFLI DVEKGVSYCF FAQAVIFSRK TNHKSPESIT 240
  241 KCTEQWKSVL GETLIIVGAV VFLVTVFIIL LTISLCKRRK NRAGQKRKNT PSRLA

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	253	0.99
Transmembrane Helix	254	276	0.94
Cytoplasmic	277	295	0.98