YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LBR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	215	0.94
Transmembrane Helix	216	239	0.89
Non-Cytoplasmic	240	262	0.86
Transmembrane Helix	263	283	0.83
Cytoplasmic	284	300	0.88
Transmembrane Helix	301	320	0.94
Non-Cytoplasmic	321	329	0.74
Transmembrane Helix	330	351	0.93
Cytoplasmic	352	390	0.98
Transmembrane Helix	391	411	0.69
Non-Cytoplasmic	412	421	0.56
Transmembrane Helix	422	442	0.74
Cytoplasmic	443	451	0.85
Transmembrane Helix	452	472	0.83
Non-Cytoplasmic	473	486	0.75
Transmembrane Helix	487	509	0.85
Cytoplasmic	510	526	0.91
Transmembrane Helix	527	548	0.74
Non-Cytoplasmic	549	559	0.73
Transmembrane Helix	560	581	0.79
Cytoplasmic	582	620	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRKFADGE VVRGRWPGSS LYYEVEILSH DSTSQLYTVK YKDGTELELK ESDIKPLKSF  60
   61 KQRKSGSTSS SPSRRRSSRS RSRSRSRSPG RAPKGSRRSV SASYQADAKE KEMRREILQV 120
  121 KLTPLVLKPF ANSVSVYNGE PEHMEKSATP PKNKQERVIL STEDSYIATQ YSLRPRREEV 180
  181 KPKHRVRGTN LVTRGPVPLG TFQVTTPQRR DLEFGGVPGA LLIMLGLPAC VFLLLLQCAQ 240
  241 KDPGLLQFPP PLPALRELWE ARVCGVYLLW FFLQALFSLL PVGKVVEGTP LVDGRRLKYR 300
  301 LNGLYAFILT SAAVGTAVFW DIELYYLYTH FLQFALAAIV FSVVLSVYLY ARSLKVPRDE 360
  361 LSPASSGNAV YDFFIGRELN PRIGAFDLKF FCELRPGLIG WVVINLVMLL AEMKVQERSA 420
  421 PSLAMTLVNS FQLLYVVDAL WFEEALLTTM DIIHDGFGFM LAFGDLVWVP FTYSLQAFYL 480
  481 VNHPQDLSWP LTSVIIALKL CGYVIFRCAN SQKNAFRKNP TDPKLAHLKT IPTSTWKSLL 540
  541 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFN HILPYFYVIY FTALLIHREA RDEHQCRRKY 600
  601 GLAWEKYCQR VPYRIFPYIY