YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PXMP2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAASRLRV ESELRSLPKR ALAQYLLFLK FYPVVTKAVS SGILSALGNL LAQMIEKKQK  60
   61 KDSRSLEVSG LLRYLVYGLF VTGPLSHYLY LFMEYWVPPE VPWARVKRLL LDRLFFAPTF 120
  121 LLLFFFVMNL LEGKNISVFV AKMRSGFWPA LQMNWRMWTP LQFININYVP LQFRVLFANM 180
  181 AALFWYAYLA SLGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.55
Transmembrane Helix	31	52	0.64
Cytoplasmic	53	70	0.68
Transmembrane Helix	71	91	0.89
Non-Cytoplasmic	92	108	0.67
Transmembrane Helix	109	131	0.83
Cytoplasmic	132	144	0.49
Transmembrane Helix	145	159	0.33
Non-Cytoplasmic	160	169	0.47
Transmembrane Helix	170	189	0.85
Cytoplasmic	190	194	0.49