YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220678322, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESHLNISIL TSVPATVGNA CGIDFSQDGI FLPVLYGIFF VIGTPLNLLA LFGLYKLIQS  60
   61 ENVLPVYVIN LLISDLIQLL TLPLWMDYYA NGHNWRFGPR SCQFMGLFFY ISIYAGIFFM 120
  121 CIIALERHLA IARPLSFKHL RNLRFARWIA ISIWVLIAVP PAIAFDKLFP KQENYTLCIE 180
  181 KYPSEGSFIT YRLITLLVSF IIPLSFIVGL HRKTVRSLMA INSLLSEEKR SIRGLLTLLV 240
  241 AVFVTVLGPY HFIGCVKYVG LLIHSRKCVW EKAVFVPYQL GRGLLSLNSL LDPVFYIFLR 300
  301 RDFRAAAGNY LPCLRKVRSR SYRTEKPTSS TQDCD

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.55
Transmembrane Helix	34	55	0.93
Cytoplasmic	56	62	0.89
Transmembrane Helix	63	85	0.89
Non-Cytoplasmic	86	105	0.88
Transmembrane Helix	106	125	0.95
Cytoplasmic	126	144	0.92
Transmembrane Helix	145	165	0.95
Non-Cytoplasmic	166	188	0.97
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	231	0.94
Transmembrane Helix	232	253	0.94
Non-Cytoplasmic	254	279	0.93
Transmembrane Helix	280	299	0.70
Cytoplasmic	300	335	0.75