YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOX4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSWRSWLA NEGVKHLCLL VWLSLNVLLF WKTFLLYNQG PEYYYIHQML GLGLCLSRAS  60
   61 ASVLNLNCSL ILLPMCRTVL AYLRGSQKVP SRRTRRLLDK SKTLHITCGI TICIFSGVHV 120
  121 AAHLVNALNF SVNYSEHFLA LNAARYQNED PRKLLFTTVP GLTGVCMVVV LFLMVTASTY 180
  181 AIRVSNYDIF WYTHNLFFVF YMLLLLHVSG GLLKYQTNLD THPPGCISLN RTPSQNMSIA 240
  241 DYVSEHFHGS LPGGFSKLED HYQKTLVKIC LEEPKFQAHF PQTWIWISGP LCLYCAERLY 300
  301 RCIRSNKPVT IISVINHPSD VMELRMIKEN FKARPGQYII LHCPSVSALE NHPFTLTMCP 360
  361 TETKATFGVH FKVVGDWTER FRDLLLPPSS QDSEILPFIQ SRNYPKLYID GPFGSPFEES 420
  421 LNYEVSLCVA GGIGVTPFAS ILNTLLDDWK PYKLRRLYFI WVCRDIQSFQ WFADLLYVLH 480
  481 NKFWQENRPD FVNIQLYLSQ TDGIQKIIGE KYHTLNSRLF IGRPRWKLLF DEIAKCNRGK 540
  541 TVGVFCCGPS SISKTLHNLS NRNNSYGTKF EYNKESFS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	35	0.93
Non-Cytoplasmic	36	58	0.79
Transmembrane Helix	59	81	0.80
Cytoplasmic	82	102	0.92
Transmembrane Helix	103	123	0.96
Non-Cytoplasmic	124	158	0.92
Transmembrane Helix	159	182	0.86
Cytoplasmic	183	189	0.89
Transmembrane Helix	190	211	0.90
Non-Cytoplasmic	212	578	0.89