YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53734355, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTTTTEPP KQPCTRNTLI TQQIIPMLYC VVFITGVLLN GISGWIFFYV PSSKSFIIYL  60
   61 KNIVVADFLM GLTFPFKVLS DSGLGPWQLN VFVCRVSAVI FYVNMYVSIA FFGLISFDRY 120
  121 YKIVKPLLVS IVQSVNYSKV LSVLVWVLML LLAVPNIILT NQSVKDVTNI QCMELKNELG 180
  181 RKWHKASNYV FVSIFWIVFL LLTVFYMAIT RKIFKSHLKS RKNSISVKRK SSRNIFSIVL 240
  241 VFVVCFVPYH IARIPYTKSQ TEGHYSCQAK ETLLYTKEFT LLLSAANVCL DPIIYFFLCQ 300
  301 PFREVLNKKL RMSLTVQNDL ETSKTRRGNM IQESTDTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.79
Transmembrane Helix	25	49	0.89
Cytoplasmic	50	57	0.70
Transmembrane Helix	58	78	0.76
Non-Cytoplasmic	79	95	0.86
Transmembrane Helix	96	117	0.90
Cytoplasmic	118	136	0.87
Transmembrane Helix	137	159	0.86
Non-Cytoplasmic	160	191	0.94
Transmembrane Helix	192	210	0.97
Cytoplasmic	211	230	0.90
Transmembrane Helix	231	252	0.91
Non-Cytoplasmic	253	338	0.64