YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSGAAHSVR KGISCPTQDP NCTRIVESLS AWNDSVMSAY RLVDLPPTTT TTTSVAMVEE  60
   61 SVYPFPTVDV PDHAHYTIGA VILTVGITGM LGNFLVIYAF SRSRTLRTPA NLFIINLAIT 120
  121 DFLMCATQAP IFFTTSMHKR WIFGEKGCEL YAFCGALFGI CSMITLMVIA VDRYFVITRP 180
  181 LASIGVLSQK RALLILLVAW VYSLGWSLPP FFGWSAYVPE GLLTSCTWDY MTFTPSVRAY 240
  241 TMLLFIFVFF IPLIVIIYCY FFIFRSIRTT NEAVGKINGD NKRDSMKRFQ RLKNEWKMAK 300
  301 IALIVILMYV ISWSPYSTVA LTAFAGYSDF LTPYMNSVPA VIAKASAIHN PIIYAITHPK 360
  361 YRLAIAKYIP CLRLLLCVPK RDLHSFHSSL MSTRRSTVTS QSSDMSGRFR RTSTGKSRLS 420
  421 SASDSESGWT DTEADLSSMS SRPASRQVSC DISKDTAEMP DFKPCNSSSF KSKLKSHDSG 480
  481 IFEKSSSDVD DVSVAGIIQP DRTLTNAGDI TDVPISRGAI GRIPSIVITS ESSSLLPSVR 540
  541 PTYRISRSNV STVGTNPARR DSRGGVQQGA AHLSNAAETP ESGHIDNHRP QYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	75	0.85
Transmembrane Helix	76	100	0.88
Cytoplasmic	101	111	0.88
Transmembrane Helix	112	132	0.95
Non-Cytoplasmic	133	149	0.90
Transmembrane Helix	150	171	0.93
Cytoplasmic	172	191	0.86
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	238	0.94
Transmembrane Helix	239	262	0.92
Cytoplasmic	263	297	0.95
Transmembrane Helix	298	320	0.83
Non-Cytoplasmic	321	339	0.74
Transmembrane Helix	340	357	0.44
Cytoplasmic	358	593	0.51